ID:18911 Rapid Recompile does not support designs with EMIF/PHYLite systems in partitions other than the root_partition.
CAUSE: Rapid Recompile cannot be used to incrementally compile changes to designs with EMIF/PHYLite systems in partitions other than the root_partition in the current version of Quartus Prime Pro Edition.
ACTION: Perform a full compile instead of using Rapid Recompile.